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U3 ribonucleoprotein (Utp) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828039, updated on 18-Sep-2024

Summary

Official Full Name
U3 ribonucleoprotein (Utp) family protein
Primary source
TAIR:AT4G02400
Locus tag
AT4G02400
See related
Araport:AT4G02400
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T14P8.20; T14P8_20
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Genomic context

Location:
chromosome: 4
Exon count:
11
Sequence:
Chromosome: 4; NC_003075.7 (1054199..1057998)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene senescence-associated gene 21 Neighboring gene microRNA ath-MIR2936 precursor Neighboring gene poly(ADP-ribose) polymerase Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Concanavalin A-like lectin protein kinase family protein Neighboring gene Concanavalin A-like lectin protein kinase family protein

General gene information

NM_116473.3

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in rRNA processing  
Component Evidence Code Pubs
located_in nucleus  
part_of small-subunit processome  

General protein information

Preferred Names
U3 ribonucleoprotein (Utp) family protein
NP_567232.3
  • U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.2); Has 7468 Blast hits to 4514 proteins in 366 species: Archae - 14; Bacteria - 554; Metazoa - 2650; Fungi - 816; Plants - 392; Viruses - 146; Other Eukaryotes - 2896 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    1054199..1057998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116473.3NP_567232.3  U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567232.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XQ21, A0A654FL70, F4JHI1, Q0WLH1
    Conserved Domains (1) summary
    pfam04615
    Location:99811
    Utp14; Utp14 protein
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