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TRAF-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828009, updated on 18-Sep-2024

Summary

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Official Full Name
TRAF-like family protein
Primary source
TAIR:AT4G00780
Locus tag
AT4G00780
See related
Araport:AT4G00780
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
A_TM018A10.12; A_TM018A10_12; T18A10.3; T18A10_3
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (334573..336478)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo-response regulator 8 Neighboring gene ncRNA Neighboring gene DUF4378 domain protein Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene 60S acidic ribosomal protein family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_116304.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
TRAF-like family protein
NP_567187.1
  • TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT4G01390.1); Has 760 Blast hits to 681 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 739; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    334573..336478
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116304.4 → NP_567187.1  TRAF-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567187.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UXI0, Q8LAS4, Q8VZ38
    Conserved Domains (1) summary
    cd00121
    Location:166 → 291
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
Nucleotide Protein
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