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EID1 F-box family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828008, updated on 18-Sep-2024

Summary

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Official Symbol
EID1
Official Full Name
F-box family protein
Primary source
TAIR:AT4G02440
Locus tag
AT4G02440
See related
Araport:AT4G02440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
EMPFINDLICHER IM DUNKELROTEN LICHT 1; T14P8.22; T14P8_22
Summary
EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta.
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Genomic context

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See EID1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (1072376..1073779)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene LYR motif protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene ncRNA Neighboring gene DNA mismatch repair protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. eid1: a new Arabidopsis mutant hypersensitive in phytochrome A-dependent high-irradiance responses. Büche C, et al. Plant Cell, 2000 Apr. PMID 10760243, Free PMC Article
  2. In planta analysis of protein-protein interactions related to light signaling by bimolecular fluorescence complementation. Stolpe T, et al. Protoplasma, 2005 Dec. PMID 16333572
  3. EID1, an F-box protein involved in phytochrome A-specific light signaling. Dieterle M, et al. Genes Dev, 2001 Apr 15. PMID 11316788, Free PMC Article
  4. Functional analysis of EID1, an F-box protein involved in phytochrome A-dependent light signal transduction. Marrocco K, et al. Plant J, 2006 Feb. PMID 16412087
  5. Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis. Risseeuw EP, et al. Plant J, 2003 Jun. PMID 12795696

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. EID1 is expressed during all stages of Arabidopsis development and regulates photomorphogenesis in seedlings, rosette leaf development and flowering.
    Title: Functional analysis of EID1, an F-box protein involved in phytochrome A-dependent light signal transduction.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_116477.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ubiquitin-protein transferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within leaf development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within red, far-red light phototransduction IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of photomorphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box family protein
NP_192153.1
  • EMPFINDLICHER IM DUNKELROTEN LICHT 1 (EID1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: photoperiodism, flowering, red, far-red light phototransduction, leaf development, regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 91 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    1072376..1073779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116477.1 → NP_192153.1  F-box family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192153.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O81289, Q0WMI9, Q8LEA8
    UniProtKB/TrEMBL
    A0A5S9XPZ3, A0A654FL97
    Conserved Domains (1) summary
    pfam00646
    Location:6 → 48
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LEA8.2

Gene LinkOut

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