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DGD2 digalactosyl diacylglycerol deficient 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827960, updated on 18-Sep-2024

Summary

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Official Symbol
DGD2
Official Full Name
digalactosyl diacylglycerol deficient 2
Primary source
TAIR:AT4G00550
Locus tag
AT4G00550
See related
Araport:AT4G00550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
digalactosyl diacylglycerol deficient 2; DIGALACTOSYLDIACYLGLYCEROL SYNTHASE; F6N23.24; F6N23_24
Summary
encodes a UDP-galactose-dependent digalactosyldiacylglycerol(DGDG) synthase. Located in chloroplast outer membrane.
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Genomic context

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See DGD2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (237901..240579, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene UvrABC system protein A Neighboring gene myb domain protein 3r2 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene NAD-dependent malic enzyme 2 Neighboring gene ncRNA Neighboring gene COP1-interacting protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. response model for the interaction of atDGD2 with the membrane bilayer interface is proposed
    Title: Lipid interacting regions in phosphate stress glycosyltransferase atDGD2 from Arabidopsis thaliana.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_116279.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables UDP-galactosyltransferase activity TAS
Traceable Author Statement
more info
 PubMed 
enables UDP-glycosyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables digalactosyldiacylglycerol synthase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables digalactosyldiacylglycerol synthase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to phosphate starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within cellular response to phosphate starvation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within galactolipid biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within glycolipid biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast outer membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
digalactosyl diacylglycerol deficient 2
NP_191964.2
  • digalactosyl diacylglycerol deficient 2 (DGD2); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT3G11670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    237901..240579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340258.1 → NP_001329549.1  digalactosyl diacylglycerol deficient 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65264, Q56ZV5, Q8W1S0, Q8W1S1, W8PV82
    UniProtKB/TrEMBL
    A0A178V709, A0A5S9XPF6
    Conserved Domains (1) summary
    PLN02846
    Location:3 → 464
    PLN02846; digalactosyldiacylglycerol synthase

  2. NM_116279.5 → NP_191964.2  digalactosyl diacylglycerol deficient 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191964.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65264, Q56ZV5, Q8W1S0, Q8W1S1, W8PV82
    UniProtKB/TrEMBL
    A0A178V709, A0A5S9XPF6
    Conserved Domains (1) summary
    PLN02846
    Location:3 → 464
    PLN02846; digalactosyldiacylglycerol synthase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8W1S1.1

Gene LinkOut

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