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B160 protein B160 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827895, updated on 18-Sep-2024

Summary

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Official Symbol
B160
Official Full Name
protein B160
Primary source
TAIR:AT4G21430
Locus tag
AT4G21430
See related
Araport:AT4G21430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F18E5.50
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Genomic context

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See B160 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Sequence:
Chromosome: 4; NC_003075.7 (11407804..11412279, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 28 Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 29 Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene MYB-like 102

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis histone demethylase JMJ28 regulates CONSTANS by interacting with FBH transcription factors. Hung FY, et al. Plant Cell, 2021 May 31. PMID 33604650
  2. COMPASS functions as a module of the INO80 chromatin remodeling complex to mediate histone H3K4 methylation in Arabidopsis. Shang JY, et al. Plant Cell, 2021 Oct 11. PMID 34270751, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The Arabidopsis histone demethylase JMJ28 regulates CONSTANS by interacting with FBH transcription factors.
    Title: The Arabidopsis histone demethylase JMJ28 regulates CONSTANS by interacting with FBH transcription factors.
Submit: New GeneRIF Correction

General gene information

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NM_118263.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in epigenetic regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within_positive_effect regulation of photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within_negative_effect transcription initiation-coupled chromatin remodeling IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of Set1C/COMPASS complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
protein B160
NP_193874.2
  • B160; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G11950.1); Has 965 Blast hits to 873 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 302; Fungi - 24; Plants - 623; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11407804..11412279 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118263.3 → NP_193874.2  protein B160 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193874.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A7Y5W7, O65408, Q8H1S7
    UniProtKB/TrEMBL
    A0A178V5X3, A0A654FRU4
    Conserved Domains (3) summary
    cl28890
    Location:224 → 273
    FYVE_like_SF; FYVE domain like superfamily
    pfam08879
    Location:8 → 49
    WRC
    cl21464
    Location:765 → 859
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H1S7.1

Gene LinkOut

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