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DOF4.3 Dof-type zinc finger domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827851, updated on 18-Sep-2024

Summary

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Official Symbol
DOF4.3
Official Full Name
Dof-type zinc finger domain-containing protein
Primary source
TAIR:AT4G21040
Locus tag
AT4G21040
See related
Araport:AT4G21040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtDOF4.3; DNA-binding with One Finger 4.3; T13K14.200; T13K14_200
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Genomic context

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See DOF4.3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (11234807..11235505, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Late embryogenesis abundant protein (LEA) family protein Neighboring gene Dof-type zinc finger domain-containing protein Neighboring gene Dof-type zinc finger domain-containing protein Neighboring gene Galactosyltransferase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transcription factor AtDOF4.2 regulates shoot branching and seed coat formation in Arabidopsis. Zou HF, et al. Biochem J, 2013 Jan 15. PMID 23095045
  2. The Dof family of plant transcription factors. Yanagisawa S. Trends Plant Sci, 2002 Dec. PMID 12475498
  3. Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners. Marín-de la Rosa N, et al. Plant Physiol, 2014 Oct. PMID 25118255, Free PMC Article
  4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_118222.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
NOT involved_in positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Dof-type zinc finger domain-containing protein
NP_193836.1
  • Dof-type zinc finger domain-containing protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger domain-containing protein (TAIR:AT4G21080.1); Has 1070 Blast hits to 1069 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1065; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11234807..11235505 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118222.1 → NP_193836.1  Dof-type zinc finger domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193836.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0SVI5, Q9SUB0
    UniProtKB/TrEMBL
    A0A178UUE0, A0A5S9XUC7
    Conserved Domains (1) summary
    pfam02701
    Location:25 → 80
    zf-Dof; Dof domain, zinc finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SUB0.1

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