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EMB3131 Pentatricopeptide repeat (PPR-like) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827823, updated on 18-Sep-2024

Summary

Official Symbol
EMB3131
Official Full Name
Pentatricopeptide repeat (PPR-like) superfamily protein
Primary source
TAIR:AT4G20740
Locus tag
AT4G20740
See related
Araport:AT4G20740
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
EMBRYO DEFECTIVE 3131; F21C20.90; F21C20_90
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Genomic context

See EMB3131 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (11126140..11128916)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene calmodulin like 42

General gene information

NM_118192.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast  

General protein information

Preferred Names
Pentatricopeptide repeat (PPR-like) superfamily protein
NP_193806.1
  • Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G06710.1); Has 37034 Blast hits to 11477 proteins in 267 species: Archae - 10; Bacteria - 18; Metazoa - 245; Fungi - 473; Plants - 35231; Viruses - 0; Other Eukaryotes - 1057 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11126140..11128916
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118192.2 → NP_193806.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193806.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SVH3
    UniProtKB/TrEMBL
    A0A178V6G4, A0A5S9XUA3, A0A654FR73
    Conserved Domains (2) summary
    PLN03218
    Location:142 → 588
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:265 → 292
    PPR; PPR repeat [structural motif]
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