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Transcription factor TFIIE, alpha subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827782, updated on 18-Sep-2024

Summary

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Official Full Name
Transcription factor TFIIE, alpha subunit
Primary source
TAIR:AT4G20340
Locus tag
AT4G20340
See related
Araport:AT4G20340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9F13.4; F9F13_4
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Genomic context

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Location:
chromosome: 4
Exon count:
11
Sequence:
Chromosome: 4; NC_003075.7 (10984618..10988008)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene CTP synthase family protein Neighboring gene ribonuclease H2 subunit B Neighboring gene Transcription initiation factor TFIIE, beta subunit Neighboring gene oxidoreductase Neighboring gene ncRNA Neighboring gene RAB GTPase homolog E1B Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001341424.1
NM_001341425.1
NM_118153.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Transcription factor TFIIE, alpha subunit
NP_193767.2
  • Transcription factor TFIIE, alpha subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: endomembrane system, transcription factor TFIIE complex; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIE, alpha subunit (InterPro:IPR002853), Transcription factor TFE/TFIIEalpha, HTH domain (InterPro:IPR017919); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIE, alpha subunit (TAIR:AT1G03280.1); Has 775 Blast hits to 709 proteins in 197 species: Archae - 3; Bacteria - 16; Metazoa - 261; Fungi - 178; Plants - 106; Viruses - 31; Other Eukaryotes - 180 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10984618..10988008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118153.4 → NP_193767.2  Transcription factor TFIIE, alpha subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193767.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FR48, F4JUV3
    Conserved Domains (2) summary
    smart00531
    Location:48 → 214
    TFIIE; Transcription initiation factor IIE
    cl21459
    Location:48 → 159
    HTH; Helix-turn-helix domains

  2. NM_001341424.1 → NP_001329830.1  Transcription factor TFIIE, alpha subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FR48, F4JUV3
    Conserved Domains (2) summary
    smart00531
    Location:48 → 214
    TFIIE; Transcription initiation factor IIE
    cl21459
    Location:48 → 159
    HTH; Helix-turn-helix domains

  3. NM_001341425.1 → NP_001329831.1  Transcription factor TFIIE, alpha subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B8Y2, A0A654FR48
Nucleotide Protein
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