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LOC8277545 zinc finger transcription factor YY1 [ Ricinus communis (castor bean) ]

Gene ID: 8277545, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8277545
Gene description
zinc finger transcription factor YY1
Locus tag
RCOM_1375410
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8277545 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 6 NC_063261.1 (15939086..15943881, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994620.1 (214266..219154)

Chromosome 6 - NC_063261.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107262043 Neighboring gene probable indole-3-pyruvate monooxygenase YUCCA10 Neighboring gene zinc finger transcription factor YY1 Neighboring gene ARS-binding protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PcG protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger transcription factor YY1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063261.1 Reference ASM1957865v1

    Range
    15939086..15943881 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002528968.4 → XP_002529014.1  zinc finger transcription factor YY1

    See identical proteins and their annotated locations for XP_002529014.1

    UniProtKB/TrEMBL
    B9SSP5
    Conserved Domains (2) summary
    COG5048
    Location:94 → 168
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:82 → 101
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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