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PTAC9 plastid transcriptionally active 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827746, updated on 18-Sep-2024

Summary

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Official Symbol
PTAC9
Official Full Name
plastid transcriptionally active 9
Primary source
TAIR:AT4G20010
Locus tag
AT4G20010
See related
Araport:AT4G20010
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F18F4.110; F18F4_110; ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2; OSB2; plastid transcriptionally active 9
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Genomic context

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See PTAC9 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (10841935..10844124)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene FAR1-related sequence 1 Neighboring gene VQ motif-containing protein Neighboring gene multiple organellar RNA editing factor Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene Pectin lyase-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plant organellar DNA polymerases repair double-stranded breaks by microhomology-mediated end-joining. García-Medel PL, et al. Nucleic Acids Res, 2019 Apr 8. PMID 30698803, Free PMC Article
  2. pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. Pfalz J, et al. Plant Cell, 2006 Jan. PMID 16326926, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036597.2
NM_118120.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables single-stranded DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast nucleoid HDA PubMed 

General protein information

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Preferred Names
plastid transcriptionally active 9
NP_001031674.1
  • plastid transcriptionally active 9 (PTAC9); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plastid chromosome, nucleoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: organellar single-stranded DNA binding protein 3 (TAIR:AT5G44785.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_567593.1
  • plastid transcriptionally active 9 (PTAC9); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plastid chromosome, nucleoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: organellar single-stranded DNA binding protein 3 (TAIR:AT5G44785.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10841935..10844124
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118120.5 → NP_567593.1  plastid transcriptionally active 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567593.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49428, Q2V3G8, Q8GXH3
    UniProtKB/TrEMBL
    A0A178UX75, A0A5S9XU50, A0A654FR17
    Conserved Domains (1) summary
    cl09930
    Location:101 → 172
    RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.

  2. NM_001036597.2 → NP_001031674.1  plastid transcriptionally active 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031674.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XU50, A0A654FR17
    Conserved Domains (1) summary
    cl09930
    Location:101 → 172
    RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GXH3.2

Gene LinkOut

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