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Glycosyl hydrolase family protein with chitinase insertion domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827721, updated on 18-Sep-2024

Summary

Official Full Name
Glycosyl hydrolase family protein with chitinase insertion domain-containing protein
Primary source
TAIR:AT4G19770
Locus tag
AT4G19770
See related
Araport:AT4G19770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T16H5.130; T16H5_130
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Genomic context

Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (10753310..10754202, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Glycosyl hydrolase family protein with chitinase insertion domain-containing protein Neighboring gene Glycosyl hydrolase family protein with chitinase insertion domain-containing protein Neighboring gene pseudo Neighboring gene pseudo Neighboring gene Glycosyl hydrolase family protein with chitinase insertion domain-containing protein

General gene information

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
Glycosyl hydrolase family protein with chitinase insertion domain-containing protein
NP_193712.2
  • Glycosyl hydrolase family protein with chitinase insertion domain; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, chitinase activity, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein with chitinase insertion domain (TAIR:AT4G19800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10753310..10754202 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118097.3NP_193712.2  Glycosyl hydrolase family protein with chitinase insertion domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193712.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JTY9, O81858
    Conserved Domains (2) summary
    smart00636
    Location:1244
    Glyco_18; Glyco_18 domain
    cl10447
    Location:1250
    GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...