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SCD6 protein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827675, updated on 18-Sep-2024

Summary

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Official Full Name
SCD6 protein-like protein
Primary source
TAIR:AT4G19340
Locus tag
AT4G19340
See related
Araport:AT4G19340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T5K18.120; T5K18_120
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (10559610..10560884)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene galactose oxidase/kelch repeat protein Neighboring gene kelch repeat F-box protein Neighboring gene embryo defective 3006 Neighboring gene SCD6 protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SCD6 protein-like protein
NP_193669.1
  • SCD6 protein-related; BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G19260.1); Has 295 Blast hits to 227 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 76; Plants - 114; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10559610..10560884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118054.1 → NP_193669.1  SCD6 protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193669.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V6U3, O65705
    Conserved Domains (2) summary
    cd01736
    Location:125 → 199
    LSm14_N; Like-Sm protein 14, N-terminal domain
    cl00259
    Location:16 → 92
    Sm_like; Sm and related proteins
Nucleotide Protein
Heading Accession and Version

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