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ABCE2 RNAse l inhibitor protein 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827661, updated on 18-Sep-2024

Summary

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Official Symbol
ABCE2
Official Full Name
RNAse l inhibitor protein 2
Primary source
TAIR:AT4G19210
Locus tag
AT4G19210
See related
Araport:AT4G19210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA RNASE L INHIBITOR PROTEIN 2; ATP-binding cassette E2; ATRLI2; RLI2; RNAse l inhibitor protein 2; T18B16.180; T18B16_180
Summary
member of RLI subfamily
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Genomic context

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See ABCE2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
13
Sequence:
Chromosome: 4; NC_003075.7 (10501123..10505217)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene proline-rich family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene cytochrome P450, family 707, subfamily A, polypeptide 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RLI2 regulates Arabidopsis female gametophyte and embryo development by facilitating the assembly of the translational machinery. Yu SX, et al. Cell Rep, 2023 Jul 25. PMID 37421624
  2. AtRLI2 is an endogenous suppressor of RNA silencing. Sarmiento C, et al. Plant Mol Biol, 2006 May. PMID 16786298
  3. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655
  4. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
  5. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RLI2 regulates Arabidopsis female gametophyte and embryo development by facilitating the assembly of the translational machinery.
    Title: RLI2 regulates Arabidopsis female gametophyte and embryo development by facilitating the assembly of the translational machinery.
  2. AtRLI2 acts as an endogenous suppressor of RNA silencing. [AtRLI2]
    Title: AtRLI2 is an endogenous suppressor of RNA silencing.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_118041.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
RNAse l inhibitor protein 2
NP_193656.2
  • RNAse l inhibitor protein 2 (RLI2); FUNCTIONS IN: transporter activity; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), 4Fe-4S binding domain (InterPro:IPR001450), ATPase, AAA+ type, core (InterPro:IPR003593), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), RNase L inhibitor RLI, possible metal-binding domain (InterPro:IPR007209), ABC transporter, ABCE (InterPro:IPR013283), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: RNAse l inhibitor protein 1 (TAIR:AT3G13640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10501123..10505217
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118041.5 → NP_193656.2  RNAse l inhibitor protein 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193656.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49679, Q56WZ4, Q8LPJ4
    UniProtKB/TrEMBL
    A0A178UZT9, A0A5S9XU05
    Conserved Domains (1) summary
    COG1245
    Location:4 → 603
    Rli1; Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LPJ4.1

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