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Ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827653, updated on 18-Sep-2024

Summary

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Official Full Name
Ankyrin repeat family protein
Primary source
TAIR:AT4G19150
Locus tag
AT4G19150
See related
Araport:AT4G19150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T18B16.120; T18B16_120
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (10471331..10472742, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Replication factor-A protein 1-like protein Neighboring gene exopolysaccharide production negative regulator Neighboring gene ncRNA Neighboring gene transglutaminase family protein Neighboring gene nine-cis-epoxycarotenoid dioxygenase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001125540.1
NM_118034.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
Ankyrin repeat family protein
NP_001119012.1
  • Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G09890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_193650.2
  • Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT2G03430.1); Has 81213 Blast hits to 28344 proteins in 1181 species: Archae - 93; Bacteria - 6443; Metazoa - 41453; Fungi - 7183; Plants - 4369; Viruses - 872; Other Eukaryotes - 20800 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10471331..10472742 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118034.3 → NP_193650.2  Ankyrin repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193650.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FQX6, Q8GX17
    Conserved Domains (4) summary
    cd00204
    Location:44 → 156
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:54 → 145
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:20 → 69
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:49 → 80
    ANK; ANK repeat [structural motif]

  2. NM_001125540.1 → NP_001119012.1  Ankyrin repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119012.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYG5, F4JSG6
    Conserved Domains (3) summary
    cd00204
    Location:31 → 133
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:31 → 122
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:31 → 57
    ANK; ANK repeat [structural motif]
Nucleotide Protein
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