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IWS2 Transcription elongation factor (TFIIS) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827636, updated on 18-Sep-2024

Summary

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Official Symbol
IWS2
Official Full Name
Transcription elongation factor (TFIIS) family protein
Primary source
TAIR:AT4G19000
Locus tag
AT4G19000
See related
Araport:AT4G19000
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA IWS2 (FROM YEAST INTERACTS WITH SPT6); ATIWS2; F13C5.170; F13C5_170
Summary
The C-terminal portion of this protein has homology to the C-termini of the IWS1 (Interacts With Spt6) proteins found in yeast and humans.
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Genomic context

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See IWS2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Sequence:
Chromosome: 4; NC_003075.7 (10405137..10407339)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene AtS40-3 Neighboring gene xyloglucan endotransglucosylase/hydrolase 29 Neighboring gene E2F/DP family winged-helix DNA-binding domain-containing protein Neighboring gene Proteasome component (PCI) domain protein Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene chromomethylase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis IWS1 interacts with transcription factor BES1 and is involved in plant steroid hormone brassinosteroid regulated gene expression. Li L, et al. Proc Natl Acad Sci U S A, 2010 Feb 23. PMID 20139304, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001341312.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in brassinosteroid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of DNA-templated transcription elongation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Transcription elongation factor (TFIIS) family protein
NP_001319989.1
  • IWS2; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT1G32130.2); Has 1027 Blast hits to 954 proteins in 257 species: Archae - 2; Bacteria - 95; Metazoa - 273; Fungi - 174; Plants - 74; Viruses - 5; Other Eukaryotes - 404 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10405137..10407339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341312.1 → NP_001319989.1  Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49413
    UniProtKB/TrEMBL
    A0A2H1ZEN0
Nucleotide Protein
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