U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827585, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707)
Primary source
TAIR:AT4G18530
Locus tag
AT4G18530
See related
Araport:AT4G18530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28J12.190; F28J12_190
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
11
Sequence:
Chromosome: 4; NC_003075.7 (10217338..10220550)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene CLAVATA3/ESR-related 2 Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene uncharacterized protein Neighboring gene alpha/beta-Hydrolases superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Analysis of sticky generative cell mutants reveals that suppression of callose deposition in the generative cell is necessary for generative cell internalization and differentiation in Arabidopsis. Oh SA, et al. Plant J, 2021 Apr. PMID 33458909
  2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_001341290.1
NM_117967.7

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glycosyltransferase activity ISM
Inferred from Sequence Model
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within pollen development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707)
NP_193588.5
  • Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT4G12840.2); Has 310 Blast hits to 308 proteins in 22 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10217338..10220550
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341289.1 → NP_001328769.1  lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B5M6

  2. NM_117967.7 → NP_193588.5  lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193588.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UW47, F4JRK4
    Conserved Domains (1) summary
    pfam05212
    Location:69 → 380
    DUF707; Protein of unknown function (DUF707)

  3. NM_001341290.1 → NP_001328770.1  lysine ketoglutarate reductase trans-splicing-like protein, putative (DUF707) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UW47, A0A1P8B5N9, A0A654FQK7
    Conserved Domains (1) summary
    pfam05212
    Location:64 → 375
    DUF707; Protein of unknown function (DUF707)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.