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UBP20 ubiquitin-specific protease 20 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827513, updated on 18-Sep-2024

Summary

Official Symbol
UBP20
Official Full Name
ubiquitin-specific protease 20
Primary source
TAIR:AT4G17895
Locus tag
AT4G17895
See related
Araport:AT4G17895
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ubiquitin-specific protease 20; UBIQUITIN-SPECIFIC PROTEASE 20
Summary
Encodes a ubiquitin-specific protease.
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Genomic context

See UBP20 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Sequence:
Chromosome: 4; NC_003075.7 (9939666..9942988)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Basic helix-loop-helix (bHLH) DNA-binding family protein Neighboring gene ARF-GAP domain 8 Neighboring gene PLATZ transcription factor family protein Neighboring gene RING/U-box superfamily protein

Interactions

General gene information

NM_117899.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytosol PubMed 
located_in nucleus  

General protein information

Preferred Names
ubiquitin-specific protease 20
NP_567544.1
  • ubiquitin-specific protease 20 (UBP20); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 21 (TAIR:AT5G46740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9939666..9942988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117899.3 → NP_567544.1  ubiquitin-specific protease 20 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567544.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FPS7
    UniProtKB/TrEMBL
    A0A178V2Z7
    Conserved Domains (2) summary
    cd02661
    Location:175 → 474
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:176 → 473
    UCH; Ubiquitin carboxyl-terminal hydrolase
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