U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SYP42 syntaxin of plants 42 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827505, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
SYP42
Official Full Name
syntaxin of plants 42
Primary source
TAIR:AT4G02195
Locus tag
AT4G02195
See related
Araport:AT4G02195
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATSYP42; ATTLG2B; syntaxin of plants 42; TLG2B
Summary
Encodes a member of SYP4 Gene Family that is a plant ortholog of the Tlg2/syntaxin16 Qa-SNARE. Together with SYP43, it regulates the secretory and vacuolar transport pathways in the post-Golgi network and maintains the morphology of the Golgi apparatus and TGN and is required for extracellular resistance responses to a fungal pathogen.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SYP42 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Sequence:
Chromosome: 4; NC_003075.7 (969994..972342, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene DC1 domain-containing protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Drought-responsive family protein Neighboring gene ncRNA Neighboring gene Myb/SANT-like DNA-binding domain protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Qa-SNAREs localized to the trans-Golgi network regulate multiple transport pathways and extracellular disease resistance in plants. Uemura T, et al. Proc Natl Acad Sci U S A, 2012 Jan 31. PMID 22307646, Free PMC Article
  2. Functional redundancy between trans-Golgi network SNARE family members in Arabidopsis thaliana. Kim SJ, et al. BMC Biochem, 2013 Sep 11. PMID 24021022, Free PMC Article
  3. Interactions between syntaxins identify at least five SNARE complexes within the Golgi/prevacuolar system of the Arabidopsis cell. Sanderfoot AA, et al. Mol Biol Cell, 2001 Dec. PMID 11739776, Free PMC Article
  4. AtVPS45 complex formation at the trans-Golgi network. Bassham DC, et al. Mol Biol Cell, 2000 Jul. PMID 10888666, Free PMC Article
  5. The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. Sanderfoot AA, et al. Plant Physiol, 2000 Dec. PMID 11115874, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_116452.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables SNAP receptor activity TAS
Traceable Author Statement
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within Golgi organization IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in Golgi organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in Golgi to plasma membrane protein transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in Golgi to vacuole transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in chloroplast organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in defense response to fungus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in intracellular protein transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within intracellular protein transport TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within membrane fusion TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within protein secretion IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within regulation of defense response to fungus IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in salicylic acid mediated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in trans-Golgi network membrane organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within vacuolar transport IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in vesicle fusion IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  
located_in trans-Golgi network IDA
Inferred from Direct Assay
more info
 PubMed 
located_in trans-Golgi network TAS
Traceable Author Statement
more info
 PubMed 
located_in trans-Golgi network transport vesicle TAS
Traceable Author Statement
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
syntaxin of plants 42
NP_567223.1
  • syntaxin of plants 42 (SYP42); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), t-SNARE (InterPro:IPR010989), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 41 (TAIR:AT5G26980.2); Has 2124 Blast hits to 2113 proteins in 267 species: Archae - 1; Bacteria - 23; Metazoa - 914; Fungi - 468; Plants - 361; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    969994..972342 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116452.4 → NP_567223.1  syntaxin of plants 42 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567223.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04258, Q9SBD4, Q9SWH4
    UniProtKB/TrEMBL
    A0A178V3T8, A0A384L4D5, A0A7G2EWS3, Q0WNW7
    Conserved Domains (1) summary
    COG5325
    Location:71 → 320
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SWH4.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools