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Peptidase S41 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827495, updated on 18-Sep-2024

Summary

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Official Full Name
Peptidase S41 family protein
Primary source
TAIR:AT4G17740
Locus tag
AT4G17740
See related
Araport:AT4G17740
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL4905C; FCAALL.169
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Genomic context

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Location:
chromosome: 4
Exon count:
13
Sequence:
Chromosome: 4; NC_003075.7 (9866977..9869752, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Defensin-like (DEFL) family protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene syntaxin of plants 23 Neighboring gene heat shock factor 1 Neighboring gene PCNA domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Diverged Early From CtpB and CtpC, CtpA Has Evolved to Process D1 Precursor in Oxygenic Photosynthetic Organisms. Chang W, et al. Front Plant Sci, 2021. PMID 34002114, Free PMC Article
  2. C-terminal processing of reaction center protein D1 is essential for the function and assembly of photosystem II in Arabidopsis. Che Y, et al. Proc Natl Acad Sci U S A, 2013 Oct 1. PMID 24043802, Free PMC Article
  3. Proteome map of the chloroplast lumen of Arabidopsis thaliana. Schubert M, et al. J Biol Chem, 2002 Mar 8. PMID 11719511
  4. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article
  5. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. C-terminal processing of reaction center protein D1 is essential for the function and assembly of photosystem II in Arabidopsis. [C-terminal processing enzyme] [CtpA]
    Title: C-terminal processing of reaction center protein D1 is essential for the function and assembly of photosystem II in Arabidopsis.
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General gene information

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Homology

NM_117883.2
NM_179070.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables peptidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast thylakoid lumen HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion HDA PubMed 
located_in thylakoid HDA PubMed 
located_in thylakoid lumen HDA PubMed 

General protein information

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Preferred Names
Peptidase S41 family protein
NP_193509.1
  • Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9204 Blast hits to 9194 proteins in 1993 species: Archae - 0; Bacteria - 5702; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink).
NP_849401.1
  • Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9160 Blast hits to 9150 proteins in 1973 species: Archae - 0; Bacteria - 5658; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9866977..9869752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179070.1 → NP_849401.1  Peptidase S41 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849401.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V1H3
    Conserved Domains (3) summary
    cd07560
    Location:309 → 474
    Peptidase_S41_CPP; C-terminal processing peptidase; serine protease family S41
    PLN00049
    Location:116 → 504
    PLN00049; carboxyl-terminal processing protease; Provisional
    cd00988
    Location:199 → 288
    PDZ_CTP_protease; PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for ...

  2. NM_117883.2 → NP_193509.1  Peptidase S41 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193509.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JPY6, O23614, Q9ZP02
    UniProtKB/TrEMBL
    A0A178V1H3, A0A5S9XTG7, A0A654FQS1
    Conserved Domains (1) summary
    PLN00049
    Location:126 → 514
    PLN00049; carboxyl-terminal processing protease; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O23614.1

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