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HDG4 homeodomain GLABROUS 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827492, updated on 18-Sep-2024

Summary

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Official Symbol
HDG4
Official Full Name
homeodomain GLABROUS 4
Primary source
TAIR:AT4G17710
Locus tag
AT4G17710
See related
Araport:AT4G17710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL4890C; FCAALL.102; homeodomain GLABROUS 4
Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.
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Genomic context

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See HDG4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (9856255..9859288, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Homeodomain-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene Putative membrane lipoprotein Neighboring gene Defensin-like (DEFL) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_117880.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
homeodomain GLABROUS 4
NP_193506.2
  • homeodomain GLABROUS 4 (HDG4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-7 (TAIR:AT5G46880.1); Has 10210 Blast hits to 10152 proteins in 479 species: Archae - 0; Bacteria - 4; Metazoa - 7535; Fungi - 255; Plants - 2198; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9856255..9859288 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117880.3 → NP_193506.2  homeodomain GLABROUS 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193506.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23611, Q8L7H4
    UniProtKB/TrEMBL
    A0A178UX05, A0A5S9XU38
    Conserved Domains (4) summary
    cd08875
    Location:233 → 462
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    pfam00046
    Location:91 → 144
    Homeobox; Homeobox domain
    pfam12824
    Location:24 → 147
    MRP-L20; Mitochondrial ribosomal protein subunit L20
    cl19252
    Location:105 → 197
    MreC; rod shape-determining protein MreC
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L7H4.1

Gene LinkOut

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