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Ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827426, updated on 18-Sep-2024

Summary

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Official Full Name
Ankyrin repeat family protein
Primary source
TAIR:AT4G03490
Locus tag
AT4G03490
See related
Araport:AT4G03490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9H3.12; F9H3_12
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Sequence:
Chromosome: 4; NC_003075.7 (1549176..1554159, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ankyrin repeat family protein Neighboring gene Ankyrin repeat family protein Neighboring gene uncharacterized protein Neighboring gene Ankyrin repeat family protein Neighboring gene uncharacterized protein Neighboring gene RING membrane-anchor 1 Neighboring gene Thioredoxin superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001203740.1
NM_001340457.1
NM_001340458.1
NM_001340459.1
NM_116587.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ankyrin repeat family protein
NP_001190669.1
  • Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03500.1).
NP_192258.5
  • Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03500.1); Has 23858 Blast hits to 12012 proteins in 533 species: Archae - 27; Bacteria - 1611; Metazoa - 14070; Fungi - 1809; Plants - 2208; Viruses - 91; Other Eukaryotes - 4042 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    1549176..1554159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203740.1 → NP_001190669.1  Ankyrin repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190669.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JG88
    Conserved Domains (5) summary
    cd00204
    Location:216 → 343
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:191 → 283
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:294 → 346
    Ank_4; Ankyrin repeats (many copies)
    pfam13962
    Location:379 → 489
    PGG; Domain of unknown function
    sd00045
    Location:257 → 289
    ANK; ANK repeat [structural motif]

  2. NM_116587.6 → NP_192258.5  Ankyrin repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192258.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JG87, Q9ZT77
    Conserved Domains (5) summary
    cd00204
    Location:226 → 353
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:201 → 293
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:304 → 356
    Ank_4; Ankyrin repeats (many copies)
    pfam13962
    Location:389 → 499
    PGG; Domain of unknown function
    sd00045
    Location:267 → 299
    ANK; ANK repeat [structural motif]

  3. NM_001340457.1 → NP_001328102.1  Ankyrin repeat family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B3M4, A0A7G2EY87

  4. NM_001340458.1 → NP_001328101.1  Ankyrin repeat family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B3N1, A0A7G2EY87

  5. NM_001340459.1 → NP_001328100.1  Ankyrin repeat family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B3L8, A0A7G2EY87
Nucleotide Protein
Heading Accession and Version

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