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peptidyl-prolyl cis-trans isomerase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827415, updated on 18-Sep-2024

Summary

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Official Full Name
peptidyl-prolyl cis-trans isomerase
Primary source
TAIR:AT4G17070
Locus tag
AT4G17070
See related
Araport:AT4G17070
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL4565C; FCAALL.192
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (9595337..9598282, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene CLP protease R subunit 4 Neighboring gene ureidoglycine aminohydrolase Neighboring gene FRIGIDA interacting protein 2 Neighboring gene Histone H3 K4-specific methyltransferase SET7/9 family protein Neighboring gene Putative membrane lipoprotein Neighboring gene chloroplast beta-amylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Enhanced tolerance to oxidative stress in transgenic Arabidopsis plants expressing proteins of unknown function. Luhua S, et al. Plant Physiol, 2008 Sep. PMID 18614705, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_117811.7

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within response to oxidative stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
peptidyl-prolyl cis-trans isomerase
NP_567522.5
  • peptidyl-prolyl cis-trans isomerases; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); Has 214 Blast hits to 208 proteins in 48 species: Archae - 0; Bacteria - 43; Metazoa - 9; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9595337..9598282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117811.7 → NP_567522.5  peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567522.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FQ69, A0A7G2F3N8, Q93ZN3
    Conserved Domains (2) summary
    cl00112
    Location:77 → 136
    PAN_APPLE; PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech ...
    cl00197
    Location:170 → 322
    cyclophilin; cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug ...
Nucleotide Protein
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