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Heat shock protein HSP20/alpha crystallin family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827353, updated on 18-Sep-2024

Summary

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Official Full Name
Heat shock protein HSP20/alpha crystallin family
Primary source
TAIR:AT4G16540
Locus tag
AT4G16540
See related
Araport:AT4G16540
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL4295C; FCAALL.391
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (9313602..9317262, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ubiquitin-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene leukocyte receptor cluster-like protein Neighboring gene heat shock protein HSP20/alpha crystallin family protein Neighboring gene HSP20-like chaperone

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Heat shock protein HSP20/alpha crystallin family
NP_193387.1
  • Heat shock protein HSP20/alpha crystallin family; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), Small heat shock protein, predicted, plant (InterPro:IPR016952), Peptidase A1 (InterPro:IPR001461), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: Heat shock protein HSP20/alpha crystallin family (TAIR:AT2G03020.2); Has 121 Blast hits to 97 proteins in 24 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9313602..9317262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341110.1 → NP_001329448.1  Heat shock protein HSP20/alpha crystallin family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B7T3

  2. NM_001341111.1 → NP_001329447.1  Heat shock protein HSP20/alpha crystallin family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B7T3

  3. NM_117753.2 → NP_193387.1  Heat shock protein HSP20/alpha crystallin family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193387.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O23498
    Conserved Domains (1) summary
    cd00298
    Location:156 → 230
    ACD_sHsps_p23-like; This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, ...

  4. NM_001341112.1 → NP_001329449.1  Heat shock protein HSP20/alpha crystallin family [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B7S6, A0A654FQ18
Nucleotide Protein
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