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LDL3 LSD1-like 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827325, updated on 18-Sep-2024

Summary

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Official Symbol
LDL3
Official Full Name
LSD1-like 3
Primary source
TAIR:AT4G16310
Locus tag
AT4G16310
See related
Araport:AT4G16310
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL4185W; FCAALL.342; LSD1-like 3
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Genomic context

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See LDL3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Sequence:
Chromosome: 4; NC_003075.7 (9217988..9226280)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene flowering time control protein FCA Neighboring gene S-protein homologue 1 Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein Neighboring gene calcineurin B-like protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Primed histone demethylation regulates shoot regenerative competency. Ishihara H, et al. Nat Commun, 2019 Apr 16. PMID 30992430, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001341093.1
NM_001341096.1
NM_117726.5

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
LSD1-like 3
NP_001319957.1
  • LSD1-like 3 (LDL3); FUNCTIONS IN: primary amine oxidase activity; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Adrenodoxin reductase (InterPro:IPR000759), SWIRM (InterPro:IPR007526); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family protein (TAIR:AT3G10390.1); Has 1823 Blast hits to 1718 proteins in 423 species: Archae - 23; Bacteria - 1184; Metazoa - 118; Fungi - 119; Plants - 329; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9217988..9226280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341094.1 → NP_001328665.1  LSD1-like 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D2CJC4, F4JLS1, O23476, O23477, Q5BPL0
    UniProtKB/TrEMBL
    A0A5S9XTU1, A0A654FPU5
    Conserved Domains (1) summary
    PLN02976
    Location:1 → 1628
    PLN02976; amine oxidase

  2. NM_001341095.1 → NP_001328666.1  LSD1-like 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D2CJC4, F4JLS1, O23476, O23477, Q5BPL0
    UniProtKB/TrEMBL
    A0A5S9XTU1, A0A654FPU5
    Conserved Domains (1) summary
    PLN02976
    Location:1 → 1628
    PLN02976; amine oxidase

  3. NM_001341093.1 → NP_001319957.1  LSD1-like 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D2CJC4, F4JLS1, O23476, O23477, Q5BPL0
    UniProtKB/TrEMBL
    A0A5S9XTU1, A0A654FPU5
    Conserved Domains (1) summary
    PLN02976
    Location:1 → 1628
    PLN02976; amine oxidase

  4. NM_001341096.1 → NP_001328664.1  LSD1-like 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D2CJC4, F4JLS1, O23476, O23477, Q5BPL0
    UniProtKB/TrEMBL
    A0A5S9XTU1, A0A654FPU5
    Conserved Domains (1) summary
    PLN02976
    Location:1 → 1628
    PLN02976; amine oxidase

  5. NM_117726.5 → NP_193364.5  LSD1-like 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193364.5

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D2CJC4, F4JLS1, O23476, O23477, Q5BPL0
    UniProtKB/TrEMBL
    A0A5S9XTU1, A0A654FPU5
    Conserved Domains (1) summary
    PLN02976
    Location:1 → 1628
    PLN02976; amine oxidase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JLS1.1

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