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COBL7 COBRA-like protein-7 precursor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827298, updated on 18-Sep-2024

Summary

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Official Symbol
COBL7
Official Full Name
COBRA-like protein-7 precursor
Primary source
TAIR:AT4G16120
Locus tag
AT4G16120
See related
Araport:AT4G16120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA SEC61 BETA 1; ATSEB1; COBRA-like protein-7 precursor; DL4100C; FCAALL.104; SEB1; SEC61 BETA 1
Summary
putative membrane-anchored cell wall protein
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Genomic context

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See COBL7 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (9116209..9119379, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-Thr Neighboring gene response regulator 2 Neighboring gene arabinose kinase Neighboring gene proline-rich family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. COBL7 is required for stomatal formation via regulation of cellulose deposition in Arabidopsis. Ge S, et al. New Phytol, 2024 Jan. PMID 37853545
  2. The identification of candidate genes for a reverse genetic analysis of development and function in the Arabidopsis gynoecium. Scutt CP, et al. Plant Physiol, 2003 Jun. PMID 12805595, Free PMC Article
  3. Analysis of a 14-kb fragment containing a putative cell wall gene and a candidate for the ARA1, arabinose kinase, gene from chromosome IV of Arabidopsis thaliana. Gy I, et al. Gene, 1998 Mar 16. PMID 9524266
  4. COBL9 and COBL7 synergistically regulate root hair tip growth via controlling apical cellulose deposition. Li Z, et al. Biochem Biophys Res Commun, 2022 Mar 12. PMID 35104663
  5. The COBRA family of putative GPI-anchored proteins in Arabidopsis. A new fellowship in expansion. Roudier F, et al. Plant Physiol, 2002 Oct. PMID 12376623, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. COBL7 is required for stomatal formation via regulation of cellulose deposition in Arabidopsis.
    Title: COBL7 is required for stomatal formation via regulation of cellulose deposition in Arabidopsis.
  2. COBL9 and COBL7 synergistically regulate root hair tip growth via controlling apical cellulose deposition.
    Title: COBL9 and COBL7 synergistically regulate root hair tip growth via controlling apical cellulose deposition.
Submit: New GeneRIF Correction

General gene information

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NM_117705.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cellulose microfibril organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within plant-type cell wall cellulose biosynthetic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within root hair cell tip growth IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in cell plate IDA
Inferred from Direct Assay
more info
 PubMed 
NOT located_in endoplasmic reticulum ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in endosome HDA PubMed 
located_in membrane TAS
Traceable Author Statement
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 
located_in trans-Golgi network HDA PubMed 

General protein information

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Preferred Names
COBRA-like protein-7 precursor
NP_567484.1
  • COBRA-like protein-7 precursor (COBL7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, Golgi apparatus, anchored to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COBRA-like protein 8 precursor (TAIR:AT3G16860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9116209..9119379 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117705.6 → NP_567484.1  COBRA-like protein-7 precursor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567484.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O24605, Q8GZ17
    UniProtKB/TrEMBL
    A0A5S9XSW3
    Conserved Domains (1) summary
    pfam04833
    Location:233 → 412
    COBRA; COBRA-like protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GZ17.2

Gene LinkOut

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