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uveal autoantigen with coiled-coil/ankyrin [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827259, updated on 18-Sep-2024

Summary

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Official Full Name
uveal autoantigen with coiled-coil/ankyrin
Primary source
TAIR:AT4G15790
Locus tag
AT4G15790
See related
Araport:AT4G15790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3935W; FCAALL.69
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Genomic context

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Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (8982183..8984344)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tRNA-Lys Neighboring gene vesicle-associated membrane protein 724 Neighboring gene ralf-like 33 Neighboring gene ncRNA Neighboring gene heat shock factor binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001341075.1
NM_117670.9

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
uveal autoantigen with coiled-coil/ankyrin
NP_567475.5
  • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8982183..8984344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117670.9 → NP_567475.5  uveal autoantigen with coiled-coil/ankyrin [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567475.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UXU6, A0A5S9XSR9, Q8LD42, Q8VYF2
    Conserved Domains (1) summary
    COG1196
    Location:31 → 146
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. NM_001341075.1 → NP_001328180.1  uveal autoantigen with coiled-coil/ankyrin [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B3W0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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