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RNA binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827257, updated on 18-Sep-2024

Summary

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Official Full Name
RNA binding protein
Primary source
TAIR:AT4G15770
Locus tag
AT4G15770
See related
Araport:AT4G15770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3925W; FCAALL.377
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (8977895..8978944)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene monooxygenase 1 Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene tRNA-Lys Neighboring gene vesicle-associated membrane protein 724

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_117668.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosome assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA binding protein
NP_193312.5
  • RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome assembly, ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Ribosome biogenesis factor NIP7-like (InterPro:IPR005155), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Ribosome biogenesis factor, NIP7 (InterPro:IPR016686); Has 438 Blast hits to 438 proteins in 213 species: Archae - 5; Bacteria - 0; Metazoa - 151; Fungi - 132; Plants - 49; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8977895..8978944
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117668.6 → NP_193312.5  RNA binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193312.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UZN8, A0A654FPL9, Q6NM52
    Conserved Domains (2) summary
    cd21146
    Location:2 → 96
    Nip7_N_euk; N-terminal domain of eukaryotic 60S ribosome subunit biogenesis protein Nip7 and similar proteins
    cd21151
    Location:103 → 180
    PUA_Nip7-like; PUA RNA binding domain of ribosome assembly factor Nip7 and similar proteins
Nucleotide Protein
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