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CW-type Zinc Finger [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827251, updated on 18-Sep-2024

Summary

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Official Full Name
CW-type Zinc Finger
Primary source
TAIR:AT4G15730
Locus tag
AT4G15730
See related
Araport:AT4G15730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3905C; FCAALL.370
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Genomic context

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Location:
chromosome: 4
Exon count:
11
Sequence:
Chromosome: 4; NC_003075.7 (8951533..8957665, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Proteinase inhibitor I25, cystatin, conserved region Neighboring gene miscRNA Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene SCR-like 11 Neighboring gene SCR-like 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001341070.1
NM_117664.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
CW-type Zinc Finger
NP_193308.2
  • CW-type Zinc Finger; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 395 Blast hits to 319 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8951533..8957665 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117664.5 → NP_193308.2  CW-type Zinc Finger [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193308.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EYC7, Q8GY51
    Conserved Domains (1) summary
    pfam07496
    Location:418 → 464
    zf-CW; CW-type Zinc Finger

  2. NM_001341070.1 → NP_001329807.1  CW-type Zinc Finger [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B8V9, A0A7G2EYC7
Nucleotide Protein
Heading Accession and Version

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