Uncharacterized protein family (UPF0497) [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Uncharacterized protein family (UPF0497)
Primary source: TAIR:AT4G15610
Locus tag: AT4G15610
See related: Araport:AT4G15610
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: CASP-like protein 1D1; CASPL1D1; DL3845W; FCAALL.139
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 3

Sequence:: Chromosome: 4; NC_003075.7 (8908763..8910945)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001341066.1

Supported by ESTs:

NM_117652.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in Golgi apparatus	HDA more info	PubMed
located_in endosome	HDA more info	PubMed
located_in plasma membrane	IDA Inferred from Direct Assay more info	PubMed
located_in trans-Golgi network	HDA more info	PubMed

General protein information

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Preferred Names: Uncharacterized protein family (UPF0497)

NP_567472.1

Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G06390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

8908763..8910945

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_117652.4 → NP_567472.1 Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_567472.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O23412, Q9FE29

UniProtKB/TrEMBL

A0A178UV95, A0A5S9XUP3

Conserved Domains (1) summary

pfam04535
Location:24 → 173

DUF588; Domain of unknown function (DUF588)
NM_001341066.1 → NP_001329530.1 Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B7Z3