PH-response transcription factor [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: PH-response transcription factor
Primary source: TAIR:AT4G15545
Locus tag: AT4G15545
See related: Araport:AT4G15545
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 8

Sequence:: Chromosome: 4; NC_003075.7 (8875656..8877799)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Role of AT4G15545(NAIP1) in the formation of endoplasmic reticulum.
Title: A Family of NAI2-Interacting Proteins in the Biogenesis of the ER Body and Related Structures.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_117645.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within ER body organization	IGI Inferred from Genetic Interaction more info	PubMed

Component	Evidence Code	Pubs
located_in ER body	IDA Inferred from Direct Assay more info	PubMed
located_in cytosol	HDA more info	PubMed
located_in endoplasmic reticulum	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: PH-response transcription factor

NP_567470.1

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

8875656..8877799

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_117645.3 → NP_567470.1 PH-response transcription factor [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_567470.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q93W28

UniProtKB/TrEMBL

A0A178V5U8, A0A5S9XSP3, A0A654FPL5

Conserved Domains (2) summary

PHA03307
Location:155 → 262

PHA03307; transcriptional regulator ICP4; Provisional

pfam01576
Location:49 → 128

Myosin_tail_1; Myosin tail