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PPD1 Photosystem II reaction center PsbP family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827223, updated on 18-Sep-2024

Summary

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Official Symbol
PPD1
Official Full Name
Photosystem II reaction center PsbP family protein
Primary source
TAIR:AT4G15510
Locus tag
AT4G15510
See related
Araport:AT4G15510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3795W; FCAALL.88; PsbP-Domain Protein1
Summary
A nuclear-encoded thylakoid lumenal protein that is associated with photosystem I (PSI) but is not an integral subunit of PSI. It is an PSI assembly factor that assists the proper folding and integration of PsaB and PsaA into the thylakoid membrane. It is involved in the assembly of PSI reaction center heterodimer core.
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Genomic context

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See PPD1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (8860462..8862693)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene ncRNA Neighboring gene tRNA/rRNA methyltransferase (SpoU) family protein Neighboring gene pyruvate orthophosphate dikinase Neighboring gene EamA-like transporter family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The PsbP domain protein 1 functions in the assembly of lumenal domains in photosystem I. Roose JL, et al. J Biol Chem, 2014 Aug 22. PMID 25008325, Free PMC Article
  2. PsbP-domain protein1, a nuclear-encoded thylakoid lumenal protein, is essential for photosystem I assembly in Arabidopsis. Liu J, et al. Plant Cell, 2012 Dec. PMID 23221595, Free PMC Article
  3. Proteome map of the chloroplast lumen of Arabidopsis thaliana. Schubert M, et al. J Biol Chem, 2002 Mar 8. PMID 11719511
  4. Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Peltier JB, et al. Plant Cell, 2002 Jan. PMID 11826309, Free PMC Article
  5. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

NM_001036569.3
NM_001341049.1
NM_001341050.1
NM_117641.3
NM_202826.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within photosystem I assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
located_in chloroplast thylakoid lumen HDA PubMed 
located_in chloroplast thylakoid lumen IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast thylakoid membrane HDA PubMed 
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
  
part_of photosystem II oxygen evolving complex IEA
Inferred from Electronic Annotation
more info
  
located_in thylakoid HDA PubMed 
located_in thylakoid lumen HDA PubMed 

General protein information

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Preferred Names
Photosystem II reaction center PsbP family protein
NP_001031646.1
  • Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PsbP-like protein 1 (TAIR:AT3G55330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_567468.1
  • Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: in 9 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PsbP-like protein 1 (TAIR:AT3G55330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974555.1
  • Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8860462..8862693
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036569.3 → NP_001031646.1  Photosystem II reaction center PsbP family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031646.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23403
    Conserved Domains (1) summary
    cl03356
    Location:1 → 204
    DcrB

  2. NM_117641.3 → NP_567468.1  Photosystem II reaction center PsbP family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567468.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23403, Q3EA17, Q681Q6, Q8LF71
    UniProtKB/TrEMBL
    A0A178UV94, A0A5S9XUN7
    Conserved Domains (1) summary
    PLN00059
    Location:1 → 286
    PLN00059; PsbP domain-containing protein 1; Provisional

  3. NM_001341049.1 → NP_001328786.1  Photosystem II reaction center PsbP family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23403
    Conserved Domains (1) summary
    cl03356
    Location:1 → 204
    DcrB

  4. NM_001341050.1 → NP_001328785.1  Photosystem II reaction center PsbP family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23403
    Conserved Domains (1) summary
    cl03356
    Location:1 → 204
    DcrB

  5. NM_202826.2 → NP_974555.1  Photosystem II reaction center PsbP family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974555.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23403
    Conserved Domains (1) summary
    cl03356
    Location:1 → 224
    DUF1795; Domain of unknown function (DUF1795)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O23403.1

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