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ABCG30 pleiotropic drug resistance 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827187, updated on 18-Sep-2024

Summary

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Official Symbol
ABCG30
Official Full Name
pleiotropic drug resistance 2
Primary source
TAIR:AT4G15230
Locus tag
AT4G15230
See related
Araport:AT4G15230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATP-binding cassette G30; ATPDR2; DL3660W; FCAALL.241; PDR2; pleiotropic drug resistance 2
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Genomic context

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See ABCG30 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
24
Sequence:
Chromosome: 4; NC_003075.7 (8679754..8687519)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene beta-amylase 5 Neighboring gene pleiotropic drug resistance 13 Neighboring gene ABC-2 and Plant PDR ABC-type transporter family protein Neighboring gene miscRNA Neighboring gene ABC-2 and Plant PDR ABC-type transporter family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An ABC transporter mutation alters root exudation of phytochemicals that provoke an overhaul of natural soil microbiota. Badri DV, et al. Plant Physiol, 2009 Dec. PMID 19854857, Free PMC Article
  2. Abscisic acid transporters cooperate to control seed germination. Kang J, et al. Nat Commun, 2015 Sep 3. PMID 26334616, Free PMC Article
  3. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ABCG30 imports abscisic acid into the embryo, regulating seed germination.
    Title: Abscisic acid transporters cooperate to control seed germination.
  2. The Arabidopsis abcg30 (Atpdr2)mutant alters root exudation of Phytochemicals that significantly altered both the fungal and bacterial communities compared with the wild type. [ABCG30]
    Title: An ABC transporter mutation alters root exudation of phytochemicals that provoke an overhaul of natural soil microbiota.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001341010.1
NM_001341012.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATPase-coupled transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables ATPase-coupled transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables efflux transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in abscisic acid transport IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in abscisic acid-activated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within carbohydrate export IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in import into cell IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in intercellular transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in negative regulation of post-embryonic development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in transmembrane transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
pleiotropic drug resistance 2
NP_001319944.1
  • pleiotropic drug resistance 2 (PDR2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, drug transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 13 (TAIR:AT4G15215.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8679754..8687519
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341011.1 → NP_001328800.1  pleiotropic drug resistance 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V3Y3, A0A1P8B5R0

  2. NM_117611.5 → NP_193258.3  pleiotropic drug resistance 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193258.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23376, O23377, Q7PC89, Q8GZ52
    UniProtKB/TrEMBL
    A0A178V3Y3
    Conserved Domains (6) summary
    cd03232
    Location:805 → 1035
    ABCG_PDR_domain2; Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters
    PLN03140
    Location:21 → 1400
    PLN03140; ABC transporter G family member; Provisional
    pfam01061
    Location:1130 → 1337
    ABC2_membrane; ABC-2 type transporter
    pfam08370
    Location:709 → 771
    PDR_assoc; Plant PDR ABC transporter associated
    pfam14510
    Location:52 → 138
    ABC_trans_N; ABC-transporter extracellular N-terminal
    cl21455
    Location:131 → 395
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. NM_001341010.1 → NP_001319944.1  pleiotropic drug resistance 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23376, O23377, Q7PC89, Q8GZ52
    UniProtKB/TrEMBL
    A0A178V3Y3

  4. NM_001341012.1 → NP_001328801.1  pleiotropic drug resistance 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V3Y3, A0A1P8B5S3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GZ52.2

Gene LinkOut

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