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FBD, F-box/LRR protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827169, updated on 18-Sep-2024

Summary

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Official Full Name
FBD, F-box/LRR protein
Primary source
TAIR:AT4G15060
Locus tag
AT4G15060
See related
Araport:AT4G15060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3575W; FCAALL.180
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (8599035..8601761)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene NEP-interacting protein, putative (DUF239) Neighboring gene uncharacterized protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene FBD-like domain family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
FBD, F-box/LRR protein
NP_193242.3
  • CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G55660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8599035..8601761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117593.3 → NP_193242.3  FBD, F-box/LRR protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193242.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FPH4
    Conserved Domains (4) summary
    sd00032
    Location:304 → 325
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:172 → 217
    F-box; F-box domain
    pfam07723
    Location:325 → 350
    LRR_2; Leucine Rich Repeat
    pfam08387
    Location:102 → 147
    FBD; FBD

  2. NM_001340990.1 → NP_001328179.1  FBD, F-box/LRR protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JJC9, O23360
    UniProtKB/TrEMBL
    A0A178V150
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O23360.2

Gene LinkOut

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