U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TCX2 TESMIN/TSO1-like CXC 2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827132, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
TCX2
Official Full Name
TESMIN/TSO1-like CXC 2
Primary source
TAIR:AT4G14770
Locus tag
AT4G14770
See related
Araport:AT4G14770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATTCX2; DL3425C; FCAALL.306; TESMIN/TSO1-like CXC 2; TESMIN/TSO1-LIKE CXC 2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TCX2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (8480634..8484976, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene IQ-domain 19 Neighboring gene kinase interacting (KIP1-like) family protein Neighboring gene Protein kinase superfamily protein Neighboring gene SCR-like 23 Neighboring gene ATP-dependent RNA helicase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks. Clark NM, et al. Nat Commun, 2019 Dec 6. PMID 31811116, Free PMC Article
  2. SOL1 and SOL2 regulate fate transition and cell divisions in the Arabidopsis stomatal lineage. Simmons AR, et al. Development, 2019 Feb 4. PMID 30665887, Free PMC Article
  3. Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. de Lucas M, et al. Plant Cell, 2016 Oct. PMID 27650334, Free PMC Article
  4. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article
  5. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. In the Arabidopsis root, a stem-cell-ubiquitous gene, TESMIN-LIKE CXC2 (TCX2), controls stem cell division by regulating stem cell-type specific networks.
    Title: Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001340970.1
NM_001340971.1
NM_117562.7

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within mitotic G1 phase IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within mitotic G2 phase IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within mitotic S phase IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within stomatal complex patterning IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within stomatal lineage progression IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
colocalizes_with nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
TESMIN/TSO1-like CXC 2
NP_193213.5
  • TESMIN/TSO1-like CXC 2 (TCX2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT3G22780.1); Has 1250 Blast hits to 741 proteins in 97 species: Archae - 0; Bacteria - 6; Metazoa - 464; Fungi - 8; Plants - 353; Viruses - 0; Other Eukaryotes - 419 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8480634..8484976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117562.7 → NP_193213.5  TESMIN/TSO1-like CXC 2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193213.5

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JIF5, O23333
    UniProtKB/TrEMBL
    A0A178UVP4
    Conserved Domains (1) summary
    pfam03638
    Location:374 → 411
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  2. NM_001340970.1 → NP_001328548.1  TESMIN/TSO1-like CXC 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UVP4, A0A1P8B4Y7

  3. NM_001340971.1 → NP_001328549.1  TESMIN/TSO1-like CXC 2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UVP4, A0A1P8B4Z6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JIF5.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.