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IQD19 IQ-domain 19 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827130, updated on 18-Sep-2024

Summary

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Official Symbol
IQD19
Official Full Name
IQ-domain 19
Primary source
TAIR:AT4G14750
Locus tag
AT4G14750
See related
Araport:AT4G14750
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3415W; FCAALL.303; IQ-domain 19
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Genomic context

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See IQD19 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (8470179..8472217)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene neurogenic locus notch-like protein Neighboring gene ncRNA Neighboring gene kinase interacting (KIP1-like) family protein Neighboring gene TESMIN/TSO1-like CXC 2 Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic control of trichome branch number in Arabidopsis: the roles of the FURCA loci. Luo D, et al. Development, 1999 Dec. PMID 10572032
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_117560.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in trichome branching IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
IQ-domain 19
NP_193211.2
  • IQ-domain 19 (IQD19); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 26 (TAIR:AT3G16490.1); Has 2338 Blast hits to 1945 proteins in 201 species: Archae - 4; Bacteria - 168; Metazoa - 612; Fungi - 134; Plants - 1079; Viruses - 66; Other Eukaryotes - 275 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8470179..8472217
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340965.1 → NP_001328646.1  IQ-domain 19 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1P8B590, O23331, Q8RXR4
    UniProtKB/TrEMBL
    A0A178V3R5
    Conserved Domains (3) summary
    pfam00612
    Location:166 → 184
    IQ; IQ calmodulin-binding motif
    pfam13178
    Location:300 → 386
    DUF4005; Protein of unknown function (DUF4005)
    cd22307
    Location:140 → 185
    Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif

  2. NM_001340966.1 → NP_001328647.1  IQ-domain 19 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V3R5, A0A1P8B5B0

  3. NM_117560.3 → NP_193211.2  IQ-domain 19 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193211.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V3R5, A0A5S9XSE5, F4JIF3
    Conserved Domains (3) summary
    pfam00612
    Location:107 → 125
    IQ; IQ calmodulin-binding motif
    pfam13178
    Location:241 → 327
    DUF4005; Protein of unknown function (DUF4005)
    cd22307
    Location:81 → 126
    Adgb_C_mid-like; C-terminal middle region of Androglobins (Adgbs) and related proteins; including permuted globin domain and IQ motif
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A1P8B590.1

Gene LinkOut

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