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APS3 Pseudouridine synthase/archaeosine transglycosylase-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827118, updated on 18-Sep-2024

Summary

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Official Symbol
APS3
Official Full Name
Pseudouridine synthase/archaeosine transglycosylase-like family protein
Primary source
TAIR:AT4G14680
Locus tag
AT4G14680
See related
Araport:AT4G14680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3380C; FCAALL.128
Summary
ATP sulfurylase
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Genomic context

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See APS3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (8413263..8415650, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene casein lytic proteinase B2 Neighboring gene chaperone ClpB1-like protein Neighboring gene Chlorophyll A-B binding family protein Neighboring gene Uncharacterized protein family (UPF0041)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Inter-organ signaling in plants: regulation of ATP sulfurylase and sulfate transporter genes expression in roots mediated by phloem-translocated compound. Lappartient AG, et al. Plant J, 1999 Apr. PMID 10341446
  2. Functional characterization of a gene encoding a fourth ATP sulfurylase isoform from Arabidopsis thaliana. Hatzfeld Y, et al. Gene, 2000 May 2. PMID 10806350
  3. Adenosine-5'-triphosphate-sulfurylase from Arabidopsis thaliana and Escherichia coli are functionally equivalent but structurally and kinetically divergent: nucleotide sequence of two adenosine-5'-triphosphate-sulfurylase cDNAs from Arabidopsis thaliana and analysis of a recombinant enzyme. Murillo M, et al. Arch Biochem Biophys, 1995 Oct 20. PMID 7487067
  4. Reciprocal regulation among miR395, APS and SULTR2;1 in Arabidopsis thaliana. Liang G, et al. Plant Signal Behav, 2010 Oct. PMID 20935495, Free PMC Article
  5. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. there is reciprocal regulation between SULTR2;1 and APS genes through miR395.
    Title: Reciprocal regulation among miR395, APS and SULTR2;1 in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001340955.1
NM_117550.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables sulfate adenylyltransferase (ATP) activity IEA
Inferred from Electronic Annotation
more info
  
enables sulfate adenylyltransferase (ATP) activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to sulfate starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in hydrogen sulfide biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in protein trimerization IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in sulfate assimilation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sulfate assimilation TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast NAS
Non-traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
Pseudouridine synthase/archaeosine transglycosylase-like family protein
NP_193204.1
  • APS3; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Sulphate adenylyltransferase (InterPro:IPR002650); BEST Arabidopsis thaliana protein match is: ATP sulfurylase 1 (TAIR:AT3G22890.1); Has 2059 Blast hits to 2056 proteins in 649 species: Archae - 98; Bacteria - 865; Metazoa - 242; Fungi - 201; Plants - 189; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8413263..8415650 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117550.5 → NP_193204.1  Pseudouridine synthase/archaeosine transglycosylase-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193204.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23324, Q42520, Q96530
    UniProtKB/TrEMBL
    A0A178V3I6, A0A5S9XSD7, A0A7G2F2G9
    Conserved Domains (1) summary
    cd00517
    Location:80 → 447
    ATPS; ATP-sulfurylase

  2. NM_001340955.1 → NP_001329676.1  Pseudouridine synthase/archaeosine transglycosylase-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B8I9, A0A7G2F2G9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O23324.1

Gene LinkOut

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