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AT-HSFA5 winged-helix DNA-binding transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827033, updated on 18-Sep-2024

Summary

Official Symbol
AT-HSFA5
Official Full Name
winged-helix DNA-binding transcription factor family protein
Primary source
TAIR:AT4G13980
Locus tag
AT4G13980
See related
Araport:AT4G13980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3030C; FCAALL.27; HEAT SHOCK TRANSCRIPTION FACTOR A5; HEAT SHOCK TRANSCRIPTION FACTOR A5; HSFA5
Summary
member of Heat Stress Transcription Factor (Hsf) family
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Genomic context

See AT-HSFA5 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (8076903..8079408, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Protein of unknown function (PD694200) Neighboring gene zinc ion binding protein Neighboring gene FBD-associated F-box protein Neighboring gene Exostosin family protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_117472.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
winged-helix DNA-binding transcription factor family protein
NP_567415.1
  • AT-HSFA5; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock factor 1 (TAIR:AT4G17750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8076903..8079408 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117472.4NP_567415.1  winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567415.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56X02, Q94BZ5
    UniProtKB/TrEMBL
    A0A7G2EZE1
    Conserved Domains (1) summary
    smart00415
    Location:24113
    HSF; heat shock factor