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magnesium transporter NIPA (DUF803) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827014, updated on 18-Sep-2024

Summary

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Official Full Name
magnesium transporter NIPA (DUF803)
Primary source
TAIR:AT4G13800
Locus tag
AT4G13800
See related
Araport:AT4G13800
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F18A5.190; F18A5_190
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Genomic context

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Location:
chromosome: 4
Exon count:
9
Sequence:
Chromosome: 4; NC_003075.7 (8001795..8004767, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene methionine-tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene receptor like protein 47 Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene DNAJ-like 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001340877.1
NM_001340878.1
NM_001340879.1
NM_001340880.1
NM_001340881.1
NM_001340882.1
NM_001340883.1
NM_001340884.1
NM_001340885.1
NM_117454.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables magnesium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
magnesium transporter NIPA (DUF803)
NP_001319923.1
  • Protein of unknown function (DUF803); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF803) (TAIR:AT3G23870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8001795..8004767 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340877.1 → NP_001319923.1  magnesium transporter NIPA (DUF803) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3LFA3, Q8LA45, Q9SVN3
    UniProtKB/TrEMBL
    A0A178V202, A0A5S9XS41, A0A654FNZ8
    Conserved Domains (1) summary
    pfam05653
    Location:7 → 299
    Mg_trans_NIPA; Magnesium transporter NIPA

  2. NM_001340878.1 → NP_001327957.1  magnesium transporter NIPA (DUF803) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V086, A0A1P8B356

  3. NM_001340879.1 → NP_001327956.1  magnesium transporter NIPA (DUF803) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V086, A0A1P8B362
    Conserved Domains (1) summary
    cl23754
    Location:7 → 235
    EamA; EamA-like transporter family

  4. NM_001340881.1 → NP_001327952.1  magnesium transporter NIPA (DUF803) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3LFA3, Q8LA45, Q9SVN3
    UniProtKB/TrEMBL
    A0A178V202, A0A5S9XS41, A0A654FNZ8
    Conserved Domains (1) summary
    pfam05653
    Location:7 → 299
    Mg_trans_NIPA; Magnesium transporter NIPA

  5. NM_001340880.1 → NP_001327953.1  magnesium transporter NIPA (DUF803) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V086, A0A1P8B362
    Conserved Domains (1) summary
    cl23754
    Location:7 → 235
    EamA; EamA-like transporter family

  6. NM_001340884.1 → NP_001327951.1  magnesium transporter NIPA (DUF803) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3LFA3, Q8LA45, Q9SVN3
    UniProtKB/TrEMBL
    A0A178V202, A0A5S9XS41, A0A654FNZ8
    Conserved Domains (1) summary
    pfam05653
    Location:7 → 299
    Mg_trans_NIPA; Magnesium transporter NIPA

  7. NM_001340882.1 → NP_001327955.1  magnesium transporter NIPA (DUF803) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V086, A0A1P8B356

  8. NM_001340883.1 → NP_001327954.1  magnesium transporter NIPA (DUF803) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V086, A0A1P8B362
    Conserved Domains (1) summary
    cl23754
    Location:7 → 235
    EamA; EamA-like transporter family

  9. NM_117454.2 → NP_567411.1  magnesium transporter NIPA (DUF803) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567411.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3LFA3, Q8LA45, Q9SVN3
    UniProtKB/TrEMBL
    A0A178V202, A0A5S9XS41, A0A654FNZ8
    Conserved Domains (1) summary
    pfam05653
    Location:7 → 299
    Mg_trans_NIPA; Magnesium transporter NIPA

  10. NM_001340885.1 → NP_001327950.1  magnesium transporter NIPA (DUF803) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V086, A0A1P8B362
    Conserved Domains (1) summary
    cl23754
    Location:7 → 235
    EamA; EamA-like transporter family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B3LFA3.1

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