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ATP-dependent caseinolytic (Clp) protease/crotonase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826967, updated on 18-Sep-2024

Summary

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Official Full Name
ATP-dependent caseinolytic (Clp) protease/crotonase family protein
Primary source
TAIR:AT4G13360
Locus tag
AT4G13360
See related
Araport:AT4G13360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T9E8.100; T9E8_100
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Genomic context

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Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (7775020..7777895)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene Serinc-domain containing serine and sphingolipid biosynthesis protein Neighboring gene NSP (nuclear shuttle protein)-interacting GTPase Neighboring gene serine/arginine repetitive matrix protein, putative (DUF936) Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene Proline-rich extensin-like family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_117410.7

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 3-hydroxyisobutyryl-CoA hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
ATP-dependent caseinolytic (Clp) protease/crotonase family protein
NP_193072.2
  • ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT3G24360.1); Has 20226 Blast hits to 20218 proteins in 1812 species: Archae - 355; Bacteria - 13945; Metazoa - 843; Fungi - 613; Plants - 486; Viruses - 0; Other Eukaryotes - 3984 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7775020..7777895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117410.7 → NP_193072.2  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193072.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9T0K7
    UniProtKB/TrEMBL
    A0A178UTL3, A0A5S9XSJ7
    Conserved Domains (1) summary
    pfam16113
    Location:60 → 408
    ECH_2; Enoyl-CoA hydratase/isomerase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9T0K7.2

Gene LinkOut

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