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RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826924, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT4G13100
Locus tag
AT4G13100
See related
Araport:AT4G13100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F25G13.190; F25G13_190
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (7635765..7639037, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglucosylase/hydrolase 2 Neighboring gene low-molecular-weight cysteine-rich 37 Neighboring gene BSD domain-containing protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001084914.1
NM_001203784.1
NM_001203785.1
NM_179041.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_001078383.1
  • RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G25030.2); Has 548 Blast hits to 540 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 226; Fungi - 17; Plants - 201; Viruses - 15; Other Eukaryotes - 89 (source: NCBI BLink).
NP_001190713.1
  • RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G25030.2).
NP_001190714.1
  • RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G25030.2).
NP_193046.2
  • RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G25030.2); Has 579 Blast hits to 570 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 242; Fungi - 23; Plants - 211; Viruses - 15; Other Eukaryotes - 88 (source: NCBI BLink).
NP_849372.2
  • RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G25030.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7635765..7639037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340832.1 → NP_001329821.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B8Y8, A0A5S9XRU7, A0A7G2F0B8

  2. NM_117379.3 → NP_193046.2  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193046.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XRU7, A0A7G2F0B8, F4JS89
    Conserved Domains (1) summary
    pfam13920
    Location:211 → 255
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  3. NM_001340833.1 → NP_001329824.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XRU7, A0A7G2F0B8, F4JS89
    Conserved Domains (1) summary
    pfam13920
    Location:211 → 255
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  4. NM_001340835.1 → NP_001329823.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XRU7, A0A7G2F0B8, F4JS89
    Conserved Domains (1) summary
    pfam13920
    Location:211 → 255
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  5. NM_001340834.1 → NP_001329822.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XRU7, A0A7G2F0B8, F4JS89
    Conserved Domains (1) summary
    pfam13920
    Location:211 → 255
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  6. NM_179041.2 → NP_849372.2  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849372.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EZM6, F4JS86
    Conserved Domains (1) summary
    pfam13920
    Location:217 → 261
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  7. NM_001084914.1 → NP_001078383.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078383.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EZM6, A8MR29
    Conserved Domains (1) summary
    pfam13920
    Location:208 → 252
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  8. NM_001203785.1 → NP_001190714.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190714.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EZM6, A8MR29
    Conserved Domains (1) summary
    pfam13920
    Location:208 → 252
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  9. NM_001203784.1 → NP_001190713.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190713.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XRU7, A0A7G2F0B8, F4JS90
    Conserved Domains (1) summary
    pfam13920
    Location:208 → 252
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
Nucleotide Protein
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