U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826891, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Primary source
TAIR:AT4G12790
Locus tag
AT4G12790
See related
Araport:AT4G12790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T20K18.140; T20K18_140
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (7517043..7519578, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RPA-interacting protein A Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene photosystem I subunit l Neighboring gene F-box family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Identification of Domains and Factors Involved in MINIYO Nuclear Import. Contreras R, et al. Front Plant Sci, 2019. PMID 31552063, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Miscellaneous features

  • Loc: c7519044-7518934 AT4G12790.uORF1
NM_001036544.1
NM_001084909.2
NM_001160754.1
NM_001340807.1
NM_117348.4
NM_179038.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
P-loop containing nucleoside triphosphate hydrolases superfamily protein
NP_001031621.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G22370.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001078378.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G22370.2); Has 1462 Blast hits to 1451 proteins in 282 species: Archae - 123; Bacteria - 0; Metazoa - 415; Fungi - 409; Plants - 158; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).
NP_001154226.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G22370.2); Has 1465 Blast hits to 1454 proteins in 282 species: Archae - 123; Bacteria - 0; Metazoa - 415; Fungi - 412; Plants - 158; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).
NP_567393.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G22370.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_849369.1
  • P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function, ATP binding (InterPro:IPR004130); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G22370.2); Has 1465 Blast hits to 1454 proteins in 282 species: Archae - 123; Bacteria - 0; Metazoa - 415; Fungi - 412; Plants - 158; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7517043..7519578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084909.2 → NP_001078378.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYK2, A0A384LB56, A0A7G2EWR0, Q8W4C1
    Conserved Domains (1) summary
    cd17872
    Location:3 → 245
    GPN3; GPN-loop GTPase 3

  2. NM_001340807.1 → NP_001328223.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYK2, A0A384LB56, A0A7G2EWR0, Q8W4C1
    Conserved Domains (1) summary
    cd17872
    Location:3 → 245
    GPN3; GPN-loop GTPase 3

  3. NM_179038.3 → NP_849369.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYK2, A0A384LB56, A0A7G2EWR0, Q8W4C1
    Conserved Domains (1) summary
    cd17872
    Location:3 → 245
    GPN3; GPN-loop GTPase 3

  4. NM_117348.4 → NP_567393.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYK2, A0A384LB56, A0A7G2EWR0, Q8W4C1
    Conserved Domains (1) summary
    cd17872
    Location:3 → 245
    GPN3; GPN-loop GTPase 3

  5. NM_001036544.1 → NP_001031621.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYK2, A0A384LB56, A0A7G2EWR0, Q8W4C1
    Conserved Domains (1) summary
    cd17872
    Location:3 → 245
    GPN3; GPN-loop GTPase 3

  6. NM_001160754.1 → NP_001154226.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYK2, A0A384LB56, A0A7G2EWR0, Q8W4C1
    Conserved Domains (1) summary
    cd17872
    Location:3 → 245
    GPN3; GPN-loop GTPase 3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools