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Chaperone DnaJ-domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826890, updated on 18-Sep-2024

Summary

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Official Full Name
Chaperone DnaJ-domain superfamily protein
Primary source
TAIR:AT4G12780
Locus tag
AT4G12780
See related
Araport:AT4G12780
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T20K18.130; T20K18_130
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Genomic context

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Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (7511943..7517067)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene RPA-interacting protein A Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene photosystem I subunit l Neighboring gene F-box family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Functional Study of AUXILIN-LIKE1 and 2, Two Putative Clathrin Uncoating Factors in Arabidopsis. Adamowski M, et al. Plant Cell, 2018 Mar. PMID 29511054, Free PMC Article
  2. Role of SH3 domain-containing proteins in clathrin-mediated vesicle trafficking in Arabidopsis. Lam BC, et al. Plant Cell, 2001 Nov. PMID 11701884, Free PMC Article
  3. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
  4. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001203780.1
NM_001340804.1
NM_001340805.1
NM_001340806.1
NM_117347.7

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within clathrin-dependent endocytosis IPI
Inferred from Physical Interaction
more info
 PubMed 
acts_upstream_of_or_within negative regulation of clathrin-dependent endocytosis IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within negative regulation of endocytosis IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within negative regulation of growth IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cell plate IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Chaperone DnaJ-domain superfamily protein
NP_001190709.1
  • Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G12770.1).
NP_193014.5
  • Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G12770.1); Has 31395 Blast hits to 23789 proteins in 1775 species: Archae - 112; Bacteria - 5604; Metazoa - 12875; Fungi - 3652; Plants - 1866; Viruses - 192; Other Eukaryotes - 7094 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7511943..7517067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340803.1 → NP_001329205.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B6Z5, A0A654FNP7

  2. NM_117347.7 → NP_193014.5  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193014.5

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RXD0, Q9SU08
    UniProtKB/TrEMBL
    A0A654FNP7

  3. NM_001340805.1 → NP_001329206.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B700, A0A654FNP7

  4. NM_001340804.1 → NP_001329204.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B708, A0A654FNP7

  5. NM_001340806.1 → NP_001329207.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B708, A0A654FNP7

  6. NM_001203780.1 → NP_001190709.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190709.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FNP7, F4JRG0
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SU08.2

Gene LinkOut

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