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DUF868 family protein (DUF868) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826881, updated on 18-Sep-2024

Summary

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Official Full Name
DUF868 family protein (DUF868)
Primary source
TAIR:AT4G12690
Locus tag
AT4G12690
See related
Araport:AT4G12690
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T20K18.40; T20K18_40
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (7480556..7482150)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene calcium ion-binding protein Neighboring gene ARM repeat superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001203777.2
NM_117338.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
DUF868 family protein (DUF868)
NP_001190706.1
  • Plant protein of unknown function (DUF868); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF868) (TAIR:AT2G04220.1).
NP_193005.1
  • Plant protein of unknown function (DUF868); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF868) (TAIR:AT2G04220.1); Has 288 Blast hits to 286 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 288; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7480556..7482150
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203777.2 → NP_001190706.1  DUF868 family protein (DUF868) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190706.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V2Y9, A0A5S9XRZ6, Q9SU17
    Conserved Domains (1) summary
    pfam05910
    Location:24 → 283
    DUF868; Plant protein of unknown function (DUF868)

  2. NM_117338.3 → NP_193005.1  DUF868 family protein (DUF868) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193005.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V2Y9, A0A5S9XRZ6, Q9SU17
    Conserved Domains (1) summary
    pfam05910
    Location:24 → 283
    DUF868; Plant protein of unknown function (DUF868)
Nucleotide Protein
Heading Accession and Version

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