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Double Clp-N motif protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826814, updated on 18-Sep-2024

Summary

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Official Full Name
Double Clp-N motif protein
Primary source
TAIR:AT4G12060
Locus tag
AT4G12060
See related
Araport:AT4G12060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16J13.130; F16J13_130
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (7227971..7229993, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Putative AT-hook DNA-binding family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene tRNA-Ala Neighboring gene AT-hook motif nuclear-localized protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Assembly of the chloroplast ATP-dependent Clp protease in Arabidopsis is regulated by the ClpT accessory proteins. Sjögren LL, et al. Plant Cell, 2011 Jan. PMID 21266658, Free PMC Article
  2. Structures, Functions, and Interactions of ClpT1 and ClpT2 in the Clp Protease System of Arabidopsis Chloroplasts. Kim J, et al. Plant Cell, 2015 May. PMID 25921872, Free PMC Article
  3. ClpS1 is a conserved substrate selector for the chloroplast Clp protease system in Arabidopsis. Nishimura K, et al. Plant Cell, 2013 Jun. PMID 23898032, Free PMC Article
  4. Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications. Peltier JB, et al. J Biol Chem, 2004 Feb 6. PMID 14593120
  5. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. In vivo and in vitro assays showed that ClpT1 and ClpT2 can independently interact with the single ClpP ring and ClpPR core, but not with the single ClpR ring.
    Title: Structures, Functions, and Interactions of ClpT1 and ClpT2 in the Clp Protease System of Arabidopsis Chloroplasts.
  2. Data show that ClpS1 (AT1G68660) interacts with plastid ClpC1 (AT5G50920), ClpC2 (AT3G48870), but not with ClpT1 (AT4G25370) or ClpT2 (AT4G12060).
    Title: ClpS1 is a conserved substrate selector for the chloroplast Clp protease system in Arabidopsis.
  3. ClpT1 and ClpT2 regulate the assembly of the Clp proteolytic core.
    Title: Assembly of the chloroplast ATP-dependent Clp protease in Arabidopsis is regulated by the ClpT accessory proteins.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_117276.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein histidine kinase binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast stroma HDA PubMed 
located_in cytosol HDA PubMed 
located_in plastid stroma IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Double Clp-N motif protein
NP_567386.1
  • Double Clp-N motif protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Double Clp-N motif protein (TAIR:AT4G25370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7227971..7229993 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117276.3 → NP_567386.1  Double Clp-N motif protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567386.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GW78, Q8LBJ1, Q9SZ71
    UniProtKB/TrEMBL
    A0A178UUP1
    Conserved Domains (1) summary
    pfam02861
    Location:108 → 157
    Clp_N; Clp amino terminal domain, pathogenicity island component
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GW78.1

Gene LinkOut

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