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bromo-adjacent homology (BAH) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826760, updated on 18-Sep-2024

Summary

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Official Full Name
bromo-adjacent homology (BAH) domain-containing protein
Primary source
TAIR:AT4G11560
Locus tag
AT4G11560
See related
Araport:AT4G11560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F25E4.180; F25E4_180
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Sequence:
Chromosome: 4; NC_003075.7 (6999869..7003493, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cysteine/histidine-rich C1 domain protein Neighboring gene ncRNA Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene RNI-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Coupling of H3K27me3 recognition with transcriptional repression through the BAH-PHD-CPL2 complex in Arabidopsis. Zhang YZ, et al. Nat Commun, 2020 Dec 4. PMID 33277495, Free PMC Article
  2. The SUMO E3 Ligase-Like Proteins PIAL1 and PIAL2 Interact with MOM1 and Form a Novel Complex Required for Transcriptional Silencing. Han YF, et al. Plant Cell, 2016 May. PMID 27113777, Free PMC Article
  3. A protein complex regulates RNA processing of intronic heterochromatin-containing genes in Arabidopsis. Duan CG, et al. Proc Natl Acad Sci U S A, 2017 Aug 29. PMID 28808009, Free PMC Article
  4. A histone H3K27me3 reader cooperates with a family of PHD finger-containing proteins to regulate flowering time in Arabidopsis. Qian F, et al. J Integr Plant Biol, 2021 Apr. PMID 33433058
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001340722.1
NM_117225.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables H3K27me3 modified histone binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables H3K27me3 modified histone binding IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
  
enables histone reader activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of gene expression, epigenetic IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in negative regulation of gene expression, epigenetic IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within negative regulation of transcription elongation by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within_negative_effect regulation of photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
bromo-adjacent homology (BAH) domain-containing protein
NP_192893.2
  • bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: Bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT2G25120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6999869..7003493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117225.4 → NP_192893.2  bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192893.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RXT5, Q9LDW8
    UniProtKB/TrEMBL
    A0A178V3D4
    Conserved Domains (2) summary
    cd04713
    Location:111 → 257
    BAH_plant_3; BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these ...
    cl02637
    Location:342 → 475
    TFIIS_M; Transcription factor S-II (TFIIS), central domain

  2. NM_001340722.1 → NP_001328298.1  bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V3D4, A0A1P8B497
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8RXT5.1

Gene LinkOut

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