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ARID/BRIGHT DNA-binding, ELM2 domain and myb-like DNA-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826744, updated on 18-Sep-2024

Summary

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Official Full Name
ARID/BRIGHT DNA-binding, ELM2 domain and myb-like DNA-binding domain-containing protein
Primary source
TAIR:AT4G11400
Locus tag
AT4G11400
See related
Araport:AT4G11400
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F25E4.20; F25E4_20
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (6938299..6940648)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene uncharacterized protein Neighboring gene tRNA-Thr

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis RPD3-like histone deacetylases form multiple complexes involved in stress response. Feng C, et al. J Genet Genomics, 2021 May 20. PMID 34144927
  2. Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Szponarski W, et al. Proteomics, 2004 Feb. PMID 14760709
  3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001340708.1
NM_117211.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
ARID/BRIGHT DNA-binding, ELM2 domain and myb-like DNA-binding domain-containing protein
NP_001319902.1
  • ARID/BRIGHT DNA-binding domain;ELM2 domain protein; FUNCTIONS IN: DNA binding; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), ELM2 (InterPro:IPR000949), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain;ELM2 domain protein (TAIR:AT2G46040.1); Has 254 Blast hits to 233 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 84; Fungi - 4; Plants - 166; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6938299..6940648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340708.1 → NP_001319902.1  ARID/BRIGHT DNA-binding, ELM2 domain and myb-like DNA-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q1PEA0, Q9LDD4
    UniProtKB/TrEMBL
    A0A178V343, A0A5S9XRA8
    Conserved Domains (2) summary
    smart00501
    Location:25 → 112
    BRIGHT; ARID (A/T-rich interaction domain) domain
    cd00167
    Location:474 → 518
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  2. NM_117211.2 → NP_192879.1  ARID/BRIGHT DNA-binding, ELM2 domain and myb-like DNA-binding domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192879.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q1PEA0, Q9LDD4
    UniProtKB/TrEMBL
    A0A178V343, A0A5S9XRA8
    Conserved Domains (2) summary
    smart00501
    Location:25 → 112
    BRIGHT; ARID (A/T-rich interaction domain) domain
    cd00167
    Location:474 → 518
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LDD4.1

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