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TUF vacuolar ATP synthase subunit E1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826716, updated on 18-Sep-2024

Summary

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Official Symbol
TUF
Official Full Name
vacuolar ATP synthase subunit E1
Primary source
TAIR:AT4G11150
Locus tag
AT4G11150
See related
Araport:AT4G11150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
emb2448; embryo defective 2448; T22B4.130; T22B4_130; TUFF; vacuolar ATP synthase subunit E1; VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 1; VHA-E1
Summary
Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis.
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Genomic context

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See TUF in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (6799887..6801961)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cytokinin response factor 1 Neighboring gene Translation initiation factor 2, small GTP-binding protein Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis vacuolar H-ATPase subunit E isoform 1 is required for Golgi organization and vacuole function in embryogenesis. Strompen G, et al. Plant J, 2005 Jan. PMID 15610355
  2. Functional analysis of Arabidopsis V-ATPase subunit VHA-E isoforms. Dettmer J, et al. Eur J Cell Biol, 2010 Feb-Mar. PMID 19945769
  3. SOS2 promotes salt tolerance in part by interacting with the vacuolar H+-ATPase and upregulating its transport activity. Batelli G, et al. Mol Cell Biol, 2007 Nov. PMID 17875927, Free PMC Article
  4. Mass spectrometric approach for identifying putative plasma membrane proteins of Arabidopsis leaves associated with cold acclimation. Kawamura Y, et al. Plant J, 2003 Oct. PMID 14535880
  5. The plasmodesmal protein PDLP1 localises to haustoria-associated membranes during downy mildew infection and regulates callose deposition. Caillaud MC, et al. PLoS Pathog, 2014 Oct. PMID 25393742, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_117185.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
contributes_to proton-transporting ATPase activity, rotational mechanism TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within Golgi organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
acts_upstream_of_or_within plant-type cell wall biogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in cytosol HDA PubMed 
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in cytosolic ribosome HDA PubMed 
located_in plant-type vacuole HDA PubMed 
located_in plant-type vacuole membrane IDA
Inferred from Direct Assay
more info
 PubMed 
part_of proton-transporting two-sector ATPase complex, catalytic domain IEA
Inferred from Electronic Annotation
more info
  
located_in vacuolar membrane HDA PubMed 
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
vacuolar ATP synthase subunit E1
NP_192853.1
  • vacuolar ATP synthase subunit E1 (TUF); FUNCTIONS IN: proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: in 7 processes; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 18 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit E (InterPro:IPR002842); BEST Arabidopsis thaliana protein match is: vacuolar H+-ATPase subunit E isoform 3 (TAIR:AT1G64200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6799887..6801961
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117185.5 → NP_192853.1  vacuolar ATP synthase subunit E1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192853.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O82502, Q39258
    UniProtKB/TrEMBL
    A0A5S9XRW2, A0A654FN17
    Conserved Domains (1) summary
    pfam01991
    Location:16 → 225
    vATP-synt_E; ATP synthase (E/31 kDa) subunit
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q39258.2

Gene LinkOut

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