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IQD16 IQ-domain 16 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826656, updated on 18-Sep-2024

Summary

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Official Symbol
IQD16
Official Full Name
IQ-domain 16
Primary source
TAIR:AT4G10640
Locus tag
AT4G10640
See related
Araport:AT4G10640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
IQ-domain 16; T4F9.100; T4F9_100
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Genomic context

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See IQD16 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (6571894..6574586)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Glutaredoxin family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene miscRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The IQD Family of Calmodulin-Binding Proteins Links Calcium Signaling to Microtubules, Membrane Subdomains, and the Nucleus. Bürstenbinder K, et al. Plant Physiol, 2017 Mar. PMID 28115582, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_117132.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calmodulin binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
colocalizes_with microtubule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
IQ-domain 16
NP_192802.2
  • IQ-domain 16 (IQD16); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 17 (TAIR:AT4G00820.1); Has 775 Blast hits to 774 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 3; Plants - 758; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6571894..6574586
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117132.4 → NP_192802.2  IQ-domain 16 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192802.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q7XA83, Q9T0C1, Q9ZSC0
    UniProtKB/TrEMBL
    A0A5S9XR41
    Conserved Domains (2) summary
    pfam00612
    Location:100 → 120
    IQ; IQ calmodulin-binding motif
    pfam13178
    Location:329 → 386
    DUF4005; Protein of unknown function (DUF4005)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7XA83.1

Gene LinkOut

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