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UBP9 ubiquitin-specific protease 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826649, updated on 18-Sep-2024

Summary

Official Symbol
UBP9
Official Full Name
ubiquitin-specific protease 9
Primary source
TAIR:AT4G10570
Locus tag
AT4G10570
See related
Araport:AT4G10570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T4F9.30; T4F9_30; ubiquitin-specific protease 9
Summary
encodes a ubiquitin-specific protease family member, UBP9.
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Genomic context

See UBP9 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
13
Sequence:
Chromosome: 4; NC_003075.7 (6523225..6528330, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Subtilase family protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene pseudo Neighboring gene ubiquitin-specific protease 10

General gene information

NM_117125.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytosol PubMed 
located_in nucleus PubMed 
located_in nucleus  

General protein information

Preferred Names
ubiquitin-specific protease 9
NP_192795.3
  • ubiquitin-specific protease 9 (UBP9); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin-specific peptidase, DUSP domain (InterPro:IPR006615), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 10 (TAIR:AT4G10590.1); Has 11569 Blast hits to 7616 proteins in 265 species: Archae - 0; Bacteria - 6; Metazoa - 6024; Fungi - 1995; Plants - 1380; Viruses - 8; Other Eukaryotes - 2156 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6523225..6528330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117125.4 → NP_192795.3  ubiquitin-specific protease 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192795.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9T0B6, Q9ZSB5
    UniProtKB/TrEMBL
    A0A654FMW7
    Conserved Domains (5) summary
    smart00695
    Location:38 → 137
    DUSP; Domain in ubiquitin-specific proteases
    COG5560
    Location:17 → 894
    UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
    cd02674
    Location:740 → 893
    Peptidase_C19R; A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cl02553
    Location:304 → 480
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam14533
    Location:505 → 566
    USP7_C2; Ubiquitin-specific protease C-terminal
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