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TMPIT-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826635, updated on 18-Sep-2024

Summary

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Official Full Name
TMPIT-like protein
Primary source
TAIR:AT4G10430
Locus tag
AT4G10430
See related
Araport:AT4G10430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7L13.10; F7L13_10
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Genomic context

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Location:
chromosome: 4
Exon count:
11
Sequence:
Chromosome: 4; NC_003075.7 (6454703..6458146, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene FBD / Leucine Rich Repeat domains containing protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Ribosomal protein L6 family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001340664.1
NM_001340665.1
NM_001340666.1
NM_001340667.1
NM_001340668.1
NM_001340669.1
NM_117111.5
NM_202799.2
NM_202800.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TMPIT-like protein
NP_567356.1
  • TMPIT-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: TMPIT-like protein (TAIR:AT1G33230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974528.2
  • TMPIT-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: TMPIT-like protein (TAIR:AT1G33230.1); Has 243 Blast hits to 243 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 163; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
NP_974529.1
  • TMPIT-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TMPIT-like (InterPro:IPR012926); BEST Arabidopsis thaliana protein match is: TMPIT-like protein (TAIR:AT1G33230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6454703..6458146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202800.1 → NP_974529.1  TMPIT-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974529.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EX19, Q93XX0
    Conserved Domains (1) summary
    pfam07851
    Location:36 → 334
    TMPIT; TMPIT-like protein

  2. NM_117111.5 → NP_567356.1  TMPIT-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567356.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EX19, Q93XX0
    Conserved Domains (1) summary
    pfam07851
    Location:36 → 334
    TMPIT; TMPIT-like protein

  3. NM_001340666.1 → NP_001328461.1  TMPIT-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4R3, C0Z2M2
    Conserved Domains (1) summary
    pfam07851
    Location:36 → 288
    TMPIT; TMPIT-like protein

  4. NM_001340664.1 → NP_001328459.1  TMPIT-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4R3, C0Z2M2
    Conserved Domains (1) summary
    pfam07851
    Location:36 → 288
    TMPIT; TMPIT-like protein

  5. NM_001340665.1 → NP_001328458.1  TMPIT-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4R3, C0Z2M2
    Conserved Domains (1) summary
    pfam07851
    Location:36 → 288
    TMPIT; TMPIT-like protein

  6. NM_001340667.1 → NP_001328460.1  TMPIT-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4Q6, C0Z2M2
    Conserved Domains (1) summary
    pfam07851
    Location:36 → 283
    TMPIT; TMPIT-like protein

  7. NM_202799.2 → NP_974528.2  TMPIT-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974528.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JLP0
    Conserved Domains (1) summary
    pfam07851
    Location:6 → 207
    TMPIT; TMPIT-like protein

  8. NM_001340668.1 → NP_001328463.1  TMPIT-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4R5

  9. NM_001340669.1 → NP_001328462.1  TMPIT-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4R3, C0Z2M2
    Conserved Domains (1) summary
    pfam07851
    Location:36 → 288
    TMPIT; TMPIT-like protein
Nucleotide Protein
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